CMC
non-CMC
Not classified
Authors
Malwina Suszynska
Magdalena Machowska
Eliza Fraszczyk
Maciej Michalczyk
Anna Philips
Paulina Galka-Marciniak
Piotr Kozlowski
Contact
Piotr Kozlowski
Department of Molecular Genetics, Institute of Bioorganic Chemistry
Polish Academy of Sciences, Poznan, 61-704, Poland
Citation
“CMC: Cancer miRNA Census – a curated list of cancer-associated miRNA genes” Malwina Suszynska, Magdalena Machowska, Eliza Fraszczyk, Maciej Michalczyk, Anna Philips, Paulina Galka-Marciniak, and Piotr Kozlowski. Nucleic Acids Research 2024; doi: doi.org/10.1093/nar/gkae017
Abstract
A growing body of evidence indicates an important role of miRNAs in cancer; however, there is no definitive, convenient-to-use list of cancer-related miRNAs or miRNA genes that may serve as a reference for analyses of miRNAs in cancer. To this end, we created a list of 165 cancer-related miRNA genes called the Cancer miRNA Census (CMC). The list is based on a score, built on various types of functional and genetic evidence for the role of particular miRNAs in cancer, e.g., miRNA-cancer associations reported in databases, associations of miRNAs with cancer hallmarks, or signals of positive selection of genetic alterations in cancer. The presence of well-recognized cancer-related miRNA genes, such as MIR21, MIR155, MIR15A, MIR17, or MIRLET7s, at the top of the CMC ranking directly confirms the accuracy and robustness of the list. Additionally, to verify and indicate the reliability of CMC, we performed a validation of criteria used to build CMC, comparison of CMC with various cancer data (publications and databases), and enrichment analyses of biological pathways and processes such as Gene Ontology or DisGeNET. All validation steps showed a strong association of CMC with cancer/cancer-related processes confirming its usefulness as a reference list of miRNA genes associated with cancer.